4F5J Rational Design and Directed Evolution for Conversion of Substrate Specificity from E.coli Aspartate Aminotransferase to Tyrosine Aminotransferase: Mutant P5. date 2012-05-13
authors Addington, T.A., Fisher, A.J., Toney, M.D.
compound source
symmetry
R_factor
R_Free 0.2036
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand LLP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceJanus: Prediction and Ranking of Mutations Required for Functional Interconversion of Enzymes., Addington TA, Mertz RW, Siegel JB, Thompson JM, Fisher AJ, Filkov V, Fleischman N, Suen A, Zhang C, Toney MD, J Mol Biol. 2013 Feb 6. pii: S0022-2836(13)00065-X. doi:, 10.1016/j.jmb.2013.01.034. PMID:23396064
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (4f5j.pdb1.gz) 271 Kb
  • LPC: Ligand-Protein Contacts for 4F5J
  • CSU: Contacts of Structural Units for 4F5J
  • Structure Factors (2504 Kb)
  • Retrieve 4F5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F5J from S2C, [Save to disk]
  • Re-refined 4f5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F5J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F5J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f5j_B] [4f5j] [4f5j_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4F5J
  • Community annotation for 4F5J at PDBWiki (http://pdbwiki.org)

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