4F6S Crystal structure of human CDK8/CYCC in complex with compound 7 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]urea) date 2012-05-15
authors Schneider, E.V., Boettcher, J., Huber, R., Maskos, K.
compound source
symmetry
R_factor
R_Free 0.26028
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand 0SQ, EDO, FMT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • cyclin-dependent protein ser...


    • Primary referenceStructure-kinetic relationship study of CDK8/CycC specific compounds., Schneider EV, Bottcher J, Huber R, Maskos K, Neumann L, Proc Natl Acad Sci U S A. 2013 May 14;110(20):8081-6. doi:, 10.1073/pnas.1305378110. Epub 2013 Apr 29. PMID:23630251
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (4f6s.pdb1.gz) 206 Kb
  • LPC: Ligand-Protein Contacts for 4F6S
  • CSU: Contacts of Structural Units for 4F6S
  • Structure Factors (210 Kb)
  • Retrieve 4F6S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F6S from S2C, [Save to disk]
  • Re-refined 4f6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4F6S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4F6S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F6S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f6s_A] [4f6s_B] [4f6s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4F6S: [CYCLIN] [S_TKc ] by SMART
    • Other resources with information on 4F6S
  • Community annotation for 4F6S at PDBWiki (http://pdbwiki.org)

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