4F9A Human CDC7 kinase in complex with DBF4 and nucleotide date
authors Hughes, S., Cherepanov, P.
compound source
symmetry
R_factor
R_Free 0.24998
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.17
ligand ADP, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceCrystal structure of human CDC7 kinase in complex with its activator DBF4., Hughes S, Elustondo F, Di Fonzo A, Leroux FG, Wong AC, Snijders AP, Matthews SJ, Cherepanov P, Nat Struct Mol Biol. 2012 Oct 14. doi: 10.1038/nsmb.2404. PMID:23064647
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4f9a.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (4f9a.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4F9A
  • CSU: Contacts of Structural Units for 4F9A
  • Structure Factors (379 Kb)
  • Retrieve 4F9A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4F9A from S2C, [Save to disk]
  • Re-refined 4f9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4F9A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4F9A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4F9A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4f9a] [4f9a_C] [4f9a_D] [4f9a_B] [4f9a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4F9A: [STYKc] [ZnF_DBF ] by SMART
  • Other resources with information on 4F9A
  • Community annotation for 4F9A at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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