4FA3 Crystal structure of human 17beta-hydroxysteroid dehydrogenase type 5 in complex with (R)-1-(naphthalen-2-ylsulfonyl)piperidine-3-carboxylic acid (86) date 2012-05-21
authors Turnbull, A.P., Jamieson, S.M.F., Brooke, D.G., Heinrich, D., Atwell, G.J., Silva, S., Hamilton, E.J., Rigoreau, L.J.M., Trivier, E., Soudy, C., Samlal, S.S., Owen, P.J., Schroeder, E., Raynham, T., Flanagan, J.U., Denny, W.A.
compound source
symmetry
R_factor
R_Free 0.27808
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 0SL, ACT, EDO, NAP BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • NADP-retinol dehydrogenase a...


    • Primary reference3-(3,4-Dihydroisoquinolin-2(1H)-ylsulfonyl)benzoic Acids: Highly Potent and Selective Inhibitors of the Type 5 17-beta-Hydroxysteroid Dehydrogenase AKR1C3., Jamieson SM, Brooke DG, Heinrich D, Atwell GJ, Silva S, Hamilton EJ, Turnbull AP, Rigoreau LJ, Trivier E, Soudy C, Samlal SS, Owen PJ, Schroeder E, Raynham T, Flanagan JU, Denny WA, J Med Chem. 2012 Sep 13;55(17):7746-58. Epub 2012 Aug 21. PMID:22877157
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4fa3.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4FA3
  • CSU: Contacts of Structural Units for 4FA3
  • Structure Factors (259 Kb)
  • Retrieve 4FA3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FA3 from S2C, [Save to disk]
  • Re-refined 4fa3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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    • Visual 3D analysis of 4FA3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FA3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fa3] [4fa3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FA3
  • Community annotation for 4FA3 at PDBWiki (http://pdbwiki.org)
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