4FE1 Improving the Accuracy of Macromolecular Structure Refinement at 7 A Resolution date
authors Fromme, R., Adams, P.D., Fromme, P., Levitt, M., Schroeder, G.F., Brunger, A.T.
compound source
symmetry
R_factor
R_Free 0.3145
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.92
ligand BCR, CA, CLA, LHG, LMG, PQN, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • B
  • electron transfer activity


  • C


    D


    E


    F


    I


    J


    K


    L


    M


    Primary referenceImproving the accuracy of macromolecular structure refinement at 7 A resolution., Brunger AT, Adams PD, Fromme P, Fromme R, Levitt M, Schroder GF, Structure. 2012 Jun 6;20(6):957-66. PMID:22681901
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1058 Kb) [Save to disk]
  • Biological Unit Coordinates (4fe1.pdb1.gz) 2974 Kb
  • Biological Unit Coordinates (4fe1.pdb2.gz) 2947 Kb
  • LPC: Ligand-Protein Contacts for 4FE1
  • CSU: Contacts of Structural Units for 4FE1
  • Structure Factors (196 Kb)
  • Retrieve 4FE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FE1 from S2C, [Save to disk]
  • Re-refined 4fe1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FE1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FE1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fe1_K] [4fe1_E] [4fe1_M] [4fe1_A] [4fe1_J] [4fe1_F] [4fe1_L] [4fe1_X] [4fe1_D] [4fe1] [4fe1_B] [4fe1_I] [4fe1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FE1
  • Community annotation for 4FE1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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