4FGW Structure of Glycerol-3-Phosphate Dehydrogenase, GPD1, from Sacharomyces Cerevisiae date 2012-06-05
authors Aparicio, D., Munmun, N., Carpena, X., Fita, I., Loewen, P.
compound source
symmetry
R_factor
R_Free 0.2075
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of glycerol-3-phosphate dehydrogenase (GPD1) from Saccharomyces cerevisiae at 2.45 A resolution., Alarcon DA, Nandi M, Carpena X, Fita I, Loewen PC, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Nov 1;68(Pt 11):1279-83., doi: 10.1107/S1744309112037736. Epub 2012 Oct 26. PMID:23143232
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (4fgw.pdb1.gz) 232 Kb
  • CSU: Contacts of Structural Units for 4FGW
  • Structure Factors (561 Kb)
  • Retrieve 4FGW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FGW from S2C, [Save to disk]
  • Re-refined 4fgw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FGW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FGW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FGW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fgw_B] [4fgw_A] [4fgw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FGW
  • Community annotation for 4FGW at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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