4FH1 S. cerevisiae Ubc13-N79A date
authors Berndsen, C.E., Wolberger, C., Wiener, R.
compound source
symmetry
R_factor
R_Free 0.24553
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.61
ligand NHE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA conserved asparagine has a structural role in ubiquitin-conjugating enzymes., Berndsen CE, Wiener R, Yu IW, Ringel AE, Wolberger C, Nat Chem Biol. 2013 Mar;9(3):154-6. doi: 10.1038/nchembio.1159. Epub 2013 Jan 6. PMID:23292652
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (4fh1.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 4FH1
  • CSU: Contacts of Structural Units for 4FH1
  • Structure Factors (92 Kb)
  • Retrieve 4FH1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FH1 from S2C, [Save to disk]
  • Re-refined 4fh1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FH1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FH1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FH1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fh1_A] [4fh1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4FH1: [UBCc ] by SMART
  • Other resources with information on 4FH1
  • Community annotation for 4FH1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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