4FJV	Crystal Structure of Human Otubain2 and Ubiquitin Complex	date	2012-06-12
authors	Altun, M., Walter, T.S., Kramer, H.B., Iphofer, A., David, Y., Komsany, A., Ternette, N., Nicholson, B., Navon, A., Stuart, D.I., Ren, J., Kessler, B.M.
compound		source
symmetry		R_factor R_Free 0.2672
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.05
ligand	GOL, NEH	enzyme
Gene Ontology	Chain Function Process Component A, C
Primary reference	The human otubain2-ubiquitin structure provides insights into the cleavage specificity of poly-ubiquitin-linkages., Altun M, Walter TS, Kramer HB, Herr P, Iphofer A, Bostrom J, David Y, Komsany A, Ternette N, Navon A, Stuart DI, Ren J, Kessler BM, PLoS One. 2015 Jan 15;10(1):e0115344. doi: 10.1371/journal.pone.0115344., eCollection 2015. PMID:25590432

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk] Biological Unit Coordinates (4fjv.pdb1.gz) 109 Kb Biological Unit Coordinates (4fjv.pdb2.gz) 110 Kb Biological Unit Coordinates (4fjv.pdb3.gz) 218 Kb LPC: Ligand-Protein Contacts for 4FJV CSU: Contacts of Structural Units for 4FJV Structure Factors (407 Kb) Retrieve 4FJV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4FJV from S2C, [Save to disk] Re-refined 4fjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4FJV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4FJV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4FJV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4fjv_D] [4fjv] [4fjv_A] [4fjv_C] [4fjv_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4FJV: [UBQ ] by SMART

Other resources with information on 4FJV

Community annotation for 4FJV at PDBWiki (http://pdbwiki.org)

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