4FNI Crystal structure of IsdI-W66Y in complex with heme and cyanide date 2012-06-19
authors Ukpabi, G.N., Murphy, M.E.P.
compound source
symmetry
R_factor
R_Free 0.23842
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CYN, HEM, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInactivation of the Heme Degrading Enzyme IsdI by an Active Site Substitution That Diminishes Heme Ruffling., Ukpabi G, Takayama SJ, Mauk AG, Murphy ME, J Biol Chem. 2012 Oct 5;287(41):34179-88. doi: 10.1074/jbc.M112.393249. Epub 2012, Aug 13. PMID:22891243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (4fni.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4FNI
  • CSU: Contacts of Structural Units for 4FNI
  • Structure Factors (367 Kb)
  • Retrieve 4FNI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FNI from S2C, [Save to disk]
  • Re-refined 4fni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FNI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FNI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FNI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fni_A] [4fni_B] [4fni]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FNI
  • Community annotation for 4FNI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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