4FOV Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with 3-Cyclohexyl-1-propylsulfonic acid date 2012-06-21
authors Brear, P.
compound source
symmetry
R_factor
R_Free 0.2336
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.29
ligand CXS, DMS enzyme
Gene SP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis and structural characterisation of selective non-carbohydrate-based inhibitors of bacterial sialidases., Brear P, Telford J, Taylor GL, Westwood NJ, Chembiochem. 2012 Nov 5;13(16):2374-83. doi: 10.1002/cbic.201200433. Epub 2012, Oct 15. PMID:23070966
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4fov.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 4FOV
  • CSU: Contacts of Structural Units for 4FOV
  • Structure Factors (753 Kb)
  • Retrieve 4FOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FOV from S2C, [Save to disk]
  • Re-refined 4fov structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FOV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FOV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fov_A] [4fov]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FOV
  • Community annotation for 4FOV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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