4FQP Crystal structure of human Nectin-like 5 full ectodomain (D1-D3) date 2012-06-25
authors Harrison, O.J., Jin, X., Brasch, J., Shapiro, L.
compound source
symmetry
R_factor
R_Free 0.27248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.60
ligand BMA, FUC, MAN, NAG enzyme
Primary referenceNectin ectodomain structures reveal a canonical adhesive interface., Harrison OJ, Vendome J, Brasch J, Jin X, Hong S, Katsamba PS, Ahlsen G, Troyanovsky RB, Troyanovsky SM, Honig B, Shapiro L, Nat Struct Mol Biol. 2012 Aug 19. doi: 10.1038/nsmb.2366. PMID:22902367
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4fqp.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4FQP
  • CSU: Contacts of Structural Units for 4FQP
  • Structure Factors (247 Kb)
  • Retrieve 4FQP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FQP from S2C, [Save to disk]
  • Re-refined 4fqp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FQP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FQP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FQP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fqp_A] [4fqp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4FQP: [IG_like] [IGv ] by SMART
  • Other resources with information on 4FQP
  • Community annotation for 4FQP at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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