4FQZ Crystal structure of a protease-resistant mutant form of human galectin-8 date
authors Yoshida, H., Kamitori, S.
compound source
symmetry
R_factor
R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand BGC, EDO, GAL enzyme
note 4FQZ supersedes 3NAJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray Structure of a Protease-resistant Mutant Form of Human Galectin-8 with Two Carbohydrate Recognition Domains., Yoshida H, Yamashita S, Teraoka M, Itoh A, Nakakita SI, Nishi N, Kamitori S, FEBS J. 2012 Aug 22. doi: 10.1111/j.1742-4658.2012.08753.x. PMID:22913484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4fqz.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4FQZ
  • CSU: Contacts of Structural Units for 4FQZ
  • Structure Factors (69 Kb)
  • Retrieve 4FQZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FQZ from S2C, [Save to disk]
  • Re-refined 4fqz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FQZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FQZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FQZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fqz] [4fqz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4FQZ: [GLECT] [Gal-bind_lectin ] by SMART
  • Other resources with information on 4FQZ
  • Community annotation for 4FQZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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