4FS4 Structure of BACE Bound to (S)-4-(3'-methoxy-[1,1'-biphenyl]-3-yl)-1,4-dimethyl-6-oxotetrahydropyrimidin-2(1H)-iminium date 2012-06-26
authors Strickland, C., Stamford, A.
compound source
symmetry
R_factor
R_Free 0.2331
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.74
ligand H24, TLA BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Potent and Orally Efficacious, Hydroxyethylamine-Based Inhibitor of beta-Secretase., Kaller MR, Harried SS, Albrecht B, Amarante P, Babu-Khan S, Bartberger MD, Brown J, Brown R, Chen K, Cheng Y, Citron M, Croghan MD, Graceffa R, Hickman D, Judd T, Kriemen C, La D, Li V, Lopez P, Luo Y, Masse C, Monenschein H, Nguyen T, Pennington LD, Miguel TS, Sickmier EA, Wahl RC, Weiss MM, Wen PH, Williamson T, Wood S, Xue M, Yang B, Zhang J, Patel V, Zhong W, Hitchcock S, ACS Med Chem Lett. 2012 Mar 29;3(11):886-91. doi: 10.1021/ml3000148. eCollection , 2012 Nov 8. PMID:24900403
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (4fs4.pdb1.gz) 266 Kb
  • Biological Unit Coordinates (4fs4.pdb2.gz) 135 Kb
  • Biological Unit Coordinates (4fs4.pdb3.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 4FS4
  • CSU: Contacts of Structural Units for 4FS4
  • Structure Factors (1367 Kb)
  • Retrieve 4FS4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FS4 from S2C, [Save to disk]
  • Re-refined 4fs4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FS4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FS4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FS4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fs4_B] [4fs4] [4fs4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4FS4
  • Community annotation for 4FS4 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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