4FT2 crystal structure of Zea mays ZMET2 in complex H3(1-15)K9me2 peptide and SAH date 2012-06-27
authors Du, J., Patel, D.J.
compound source
symmetry
R_factor
R_Free 0.2773
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand MLY, SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants., Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE, Cell. 2012 Sep 28;151(1):167-80. doi: 10.1016/j.cell.2012.07.034. PMID:23021223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (453 Kb) [Save to disk]
  • Biological Unit Coordinates (4ft2.pdb1.gz) 445 Kb
  • LPC: Ligand-Protein Contacts for 4FT2
  • CSU: Contacts of Structural Units for 4FT2
  • Structure Factors (449 Kb)
  • Retrieve 4FT2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FT2 from S2C, [Save to disk]
  • Re-refined 4ft2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4FT2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4FT2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FT2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4ft2, region T:200-390 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ft2_P] [4ft2] [4ft2_B] [4ft2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4FT2: [BAH] [CHROMO ] by SMART
    • Other resources with information on 4FT2
  • Community annotation for 4FT2 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science