4FU0 Crystal Structure of VanG D-Ala:D-Ser Ligase from Enterococcus faecalis date 2012-06-28
authors Meziane-Cherif, D., Saul, F.A., Haouz, A., Courvalin, P.
compound source
symmetry
R_factor
R_Free 0.22412
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand ADP, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional characterization of VanG D-Ala:D-Ser ligase associated with vancomycin resistance in Enterococcus faecalis., Meziane-Cherif D, Saul FA, Haouz A, Courvalin P, J Biol Chem. 2012 Nov 2;287(45):37583-92. doi: 10.1074/jbc.M112.405522. Epub 2012, Sep 11. PMID:22969085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4fu0.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 4FU0
  • CSU: Contacts of Structural Units for 4FU0
  • Structure Factors (772 Kb)
  • Retrieve 4FU0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FU0 from S2C, [Save to disk]
  • Re-refined 4fu0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FU0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FU0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FU0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fu0] [4fu0_B] [4fu0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4FU0
  • Community annotation for 4FU0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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