4FUA Lyase (Aldehyde) date Feb 14, 1996
title L-Fuculose-1-Phosphate Aldolase Complex With Pgh
authors M.K.Dreyer, G.E.Schulz
compound source
Molecule: L-Fuculose-1-Phosphate Aldolase
Chain: A
Ec: 4.1.2.17
Engineered: Yes
Other_details: Pgh Is A Transition State Analogue Inhibitor
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: K12 Ecl116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm105
Expression_system_plasmid: Pkkfa2
Expression_system_gene: Fuca
symmetry Space Group: F 4 3 2
R_factor 0.185 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.600 183.600 183.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand BME, PGH, SO4, ZN enzyme Lyase E.C.4.1.2.17 BRENDA
related structures by homologous chain: 1DZX, 1DZY
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCatalytic mechanism of the metal-dependent fuculose aldolase from Escherichia coli as derived from the structure., Dreyer MK, Schulz GE, J Mol Biol 1996 Jun 14;259(3):458-66. PMID:8676381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4fua.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (4fua.pdb2.gz) 801 Kb
  • LPC: Ligand-Protein Contacts for 4FUA
  • CSU: Contacts of Structural Units for 4FUA
  • Likely Quarternary Molecular Structure file(s) for 4FUA
  • Structure Factors (85 Kb)
  • Retrieve 4FUA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FUA from S2C, [Save to disk]
  • Re-refined 4fua structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FUA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FUA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FUA, from MSDmotif at EBI
  • Genome occurence of 4FUA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d4fua__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4fua_A] [4fua]
  • SWISS-PROT database: [P0AB87]
  • Domain organization of [FUCA_ECOLI] by SWISSPFAM
  • Domain found in 4FUA: [Aldolase_II ] by SMART
  • Other resources with information on 4FUA
  • Community annotation for 4FUA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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