4FUL PI3 Kinase Gamma bound to a pyrmidine inhibitor date 2012-06-28
authors Gopalsamy, A., Bennett, E.M., Shi, M., Zhang, W.G., Bard, J., Yu, K.
compound source
symmetry
R_factor
R_Free 0.2614
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.47
ligand 0VU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of pyrimidine derivatives as hSMG-1 inhibitors., Gopalsamy A, Bennett EM, Shi M, Zhang WG, Bard J, Yu K, Bioorg Med Chem Lett. 2012 Nov 1;22(21):6636-41. doi: 10.1016/j.bmcl.2012.08.107., Epub 2012 Sep 7. PMID:23021994
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4ful.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 4FUL
  • CSU: Contacts of Structural Units for 4FUL
  • Structure Factors (616 Kb)
  • Retrieve 4FUL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4FUL from S2C, [Save to disk]
  • Re-refined 4ful structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4FUL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4FUL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4FUL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ful_A] [4ful]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4FUL: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 4FUL
  • Community annotation for 4FUL at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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