4G1K Crystal structure of triosephosphate isomerase from Burkholderia thailandensis date 2012-07-10
authors Disease, Seattle.Structural.Genomics.Center.for.Infectious., SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.2023
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand ACT, EDO, NA enzyme
Gene BTH
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCombining functional and structural genomics to sample the essential Burkholderia structome., Baugh L, Gallagher LA, Patrapuvich R, Clifton MC, Gardberg AS, Edwards TE, Armour B, Begley DW, Dieterich SH, Dranow DM, Abendroth J, Fairman JW, Fox D 3rd, Staker BL, Phan I, Gillespie A, Choi R, Nakazawa-Hewitt S, Nguyen MT, Napuli A, Barrett L, Buchko GW, Stacy R, Myler PJ, Stewart LJ, Manoil C, Van Voorhis WC, PLoS One. 2013;8(1):e53851. doi: 10.1371/journal.pone.0053851. Epub 2013 Jan 31. PMID:23382856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (4g1k.pdb1.gz) 148 Kb
  • Biological Unit Coordinates (4g1k.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 4G1K
  • CSU: Contacts of Structural Units for 4G1K
  • Structure Factors (787 Kb)
  • Retrieve 4G1K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G1K from S2C, [Save to disk]
  • Re-refined 4g1k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G1K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G1K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G1K, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g1k] [4g1k_C] [4g1k_D] [4g1k_A] [4g1k_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4G1K
  • Community annotation for 4G1K at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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