4G5P Crystal structure of EGFR kinase T790M in complex with BIBW2992 date
authors Solca, F., Dahl, G., Zoephel, A., Bader, G., Sanderson, M., Klein, C., Kraemer, O., Himmelsbach, F., Haaksma, E., Adolf, G.R.
compound source
symmetry
R_factor
R_Free 0.32265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.17
ligand 0WN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTarget Binding Properties and Cellular Activity of Afatinib (BIBW 2992), an Irreversible ErbB Family Blocker., Solca F, Dahl G, Zoephel A, Bader G, Sanderson M, Klein C, Kraemer O, Himmelsbach F, Haaksma E, Adolf GR, J Pharmacol Exp Ther. 2012 Aug 10. PMID:22888144
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4g5p.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4g5p.pdb2.gz) 51 Kb
  • Biological Unit Coordinates (4g5p.pdb3.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 4G5P
  • CSU: Contacts of Structural Units for 4G5P
  • Structure Factors (103 Kb)
  • Retrieve 4G5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G5P from S2C, [Save to disk]
  • Re-refined 4g5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G5P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G5P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g5p] [4g5p_B] [4g5p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G5P: [TyrKc ] by SMART
  • Other resources with information on 4G5P
  • Community annotation for 4G5P at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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