4G8O	Crystal Structure of a novel small molecule inactivator bound to plasminogen activator inhibitor-1	date
authors	Stuckey, J.A., Lawrence, D.A., Li, S.H.
compound		source
symmetry		R_factor R_Free 0.2679
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.71
ligand	96P, EDO, SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B negative regulation of endop... negative regulation of smoot...
Primary reference	Mechanistic characterization and crystal structure of a small molecule inactivator bound to plasminogen activator inhibitor-1., Li SH, Reinke AA, Sanders KL, Emal CD, Whisstock JC, Stuckey JA, Lawrence DA, Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):E4941-9. doi:, 10.1073/pnas.1216499110. Epub 2013 Dec 2. PMID:24297881

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (474 Kb) [Save to disk] Biological Unit Coordinates (4g8o.pdb1.gz) 117 Kb Biological Unit Coordinates (4g8o.pdb2.gz) 118 Kb Biological Unit Coordinates (4g8o.pdb3.gz) 122 Kb Biological Unit Coordinates (4g8o.pdb4.gz) 122 Kb LPC: Ligand-Protein Contacts for 4G8O CSU: Contacts of Structural Units for 4G8O Structure Factors (805 Kb) Retrieve 4G8O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4G8O from S2C, [Save to disk] Re-refined 4g8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4G8O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4G8O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4G8O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4g8o_A] [4g8o_C] [4g8o_D] [4g8o_B] [4g8o] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4G8O: [SERPIN ] by SMART

Other resources with information on 4G8O

Community annotation for 4G8O at PDBWiki (http://pdbwiki.org)

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