4G98 Oxidoreductase date Jul 23, 2012
title Rat Heme Oxygenase-1 In Complex With Heme And Co At 100k
authors M.Sugishima, K.Moffat, M.Noguchi
compound source
Molecule: Heme Oxygenase 1
Chain: A
Fragment: Unp Residues 1-267
Synonym: Ho-1, Hsp32
Ec: 1.14.99.3
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Hmox1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a
symmetry Space Group: P 32 2 1
R_factor 0.153 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.974 65.974 120.018 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CMO, FMT, HEM enzyme Oxidoreductase E.C.1.14.99.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscrimination between CO and O(2) in Heme Oxygenase: Comparison of Static Structures and Dynamic Conformation Changes following CO Photolysis., Sugishima M, Moffat K, Noguchi M, Biochemistry. 2012 Oct 18. PMID:23043644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4g98.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4G98
  • CSU: Contacts of Structural Units for 4G98
  • Structure Factors (194 Kb)
  • Retrieve 4G98 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G98 from S2C, [Save to disk]
  • Re-refined 4g98 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4G98 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4G98
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G98, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g98] [4g98_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4G98
  • Community annotation for 4G98 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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