4G9R B-Raf V600E Kinase Domain Bound to a Type II Dihydroquinazoline Inhibitor date 2012-07-24
authors Voegtli, W.C., Sturgis, H.L.
compound source
symmetry
R_factor
R_Free 0.27670
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand B1E enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePyrazolopyridine inhibitors of B-Raf(V600E). Part 4: rational design and kinase selectivity profile of cell potent type II inhibitors., Wenglowsky S, Moreno D, Laird ER, Gloor SL, Ren L, Risom T, Rudolph J, Sturgis HL, Voegtli WC, Bioorg Med Chem Lett. 2012 Oct 1;22(19):6237-41. doi: 10.1016/j.bmcl.2012.08.007., Epub 2012 Aug 10. PMID:22954737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (4g9r.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (4g9r.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4G9R
  • CSU: Contacts of Structural Units for 4G9R
  • Structure Factors (213 Kb)
  • Retrieve 4G9R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4G9R from S2C, [Save to disk]
  • Re-refined 4g9r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4G9R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4G9R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4G9R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4g9r_B] [4g9r] [4g9r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4G9R: [STYKc ] by SMART
    • Other resources with information on 4G9R
  • Community annotation for 4G9R at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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