4GBC Crystal structure of aspart insulin at pH 6.5 date
authors Lima, L.M.T.R., Favero-Retto, M.P., Palmieri, L.C.
compound source
symmetry
R_factor
R_Free 0.2239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.78
ligand CL, CRS, ZN enzyme
note 4GBC (Molecule of the Month:pdb194)
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceA T3R3 hexamer of the human insulin variant B28Asp., Palmieri LC, Favero-Retto MP, Lourenco D, Lima LM, Biophys Chem. 2013 Mar-Apr;173-174:1-7. doi: 10.1016/j.bpc.2013.01.003. Epub 2013, Feb 4. PMID:23428413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (4gbc.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4GBC
  • CSU: Contacts of Structural Units for 4GBC
  • Structure Factors (124 Kb)
  • Retrieve 4GBC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GBC from S2C, [Save to disk]
  • Re-refined 4gbc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GBC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GBC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GBC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gbc_C] [4gbc_A] [4gbc_D] [4gbc] [4gbc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GBC: [IlGF ] by SMART
    • Other resources with information on 4GBC
  • Community annotation for 4GBC at PDBWiki (http://pdbwiki.org)

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