4GCV Structure of a Putative transcription factor (PA1374)from Pseudomonas aeruginosa date 2012-07-31
authors Choe, J., Kim, H.
compound source
symmetry
R_factor
R_Free 0.28695
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand GOL, MSE, NA, PO4 enzyme
Primary referenceThe X-ray crystal structure of PA1374 from Pseudomonas aeruginosa, a putative oxidative-stress sensing transcriptional regulator., Kim H, Choe J, Biochem Biophys Res Commun. 2013 Feb 15;431(3):376-81. doi:, 10.1016/j.bbrc.2013.01.044. Epub 2013 Jan 18. PMID:23337505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (606 Kb) [Save to disk]
  • Biological Unit Coordinates (4gcv.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (4gcv.pdb2.gz) 102 Kb
  • Biological Unit Coordinates (4gcv.pdb3.gz) 105 Kb
  • Biological Unit Coordinates (4gcv.pdb4.gz) 104 Kb
  • Biological Unit Coordinates (4gcv.pdb5.gz) 102 Kb
  • Biological Unit Coordinates (4gcv.pdb6.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4GCV
  • CSU: Contacts of Structural Units for 4GCV
  • Structure Factors (1420 Kb)
  • Retrieve 4GCV in mmCIF format [Save to disk]
  • Re-refined 4gcv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GCV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GCV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GCV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gcv_G] [4gcv_F] [4gcv_C] [4gcv_L] [4gcv_A] [4gcv_I] [4gcv_K] [4gcv_B] [4gcv] [4gcv_D] [4gcv_J] [4gcv_H] [4gcv_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GCV
  • Community annotation for 4GCV at PDBWiki (http://pdbwiki.org)

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