4GER Crystal structure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa date
authors Ruf, A., Stihle, M., Benz, J., Schmidt, M., Sobek, H.
compound source
symmetry
R_factor
R_Free 0.24279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.59
ligand CA, LYS, THR, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of Gentlyase, the neutral metalloprotease of Paenibacillus polymyxa., Ruf A, Stihle M, Benz J, Schmidt M, Sobek H, Acta Crystallogr D Biol Crystallogr. 2013 Jan;69(Pt 1):24-31. doi:, 10.1107/S0907444912041169. Epub 2012 Dec 20. PMID:23275160
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (4ger.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (4ger.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4GER
  • CSU: Contacts of Structural Units for 4GER
  • Structure Factors (1148 Kb)
  • Retrieve 4GER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GER from S2C, [Save to disk]
  • Re-refined 4ger structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GER
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GER, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ger] [4ger_A] [4ger_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GER
  • Community annotation for 4GER at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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