4GEY High pH structure of Pseudomonas putida OprB date
authors Berg, B.van.den.
compound source
symmetry
R_factor
R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand BGC, C8E, DMU, MSE, PO4 enzyme
Gene PPUBIRD1
Gene
Ontology
ChainFunctionProcessComponent
A
  • porin activity


  • Primary referenceStructural basis for outer membrane sugar uptake in pseudomonads., van den Berg B, J Biol Chem. 2012 Oct 12. PMID:23066028
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (4gey.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 4GEY
  • CSU: Contacts of Structural Units for 4GEY
  • Structure Factors (120 Kb)
  • Retrieve 4GEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GEY from S2C, [Save to disk]
  • Re-refined 4gey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GEY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GEY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gey_A] [4gey]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GEY
  • Community annotation for 4GEY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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