4GG7 Crystal structure of cMET in complex with novel inhibitor date 2012-08-06
authors Liu, Q.F., Chen, T.T., Xu, Y.C.
compound source
symmetry
R_factor
R_Free 0.2624
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.27
ligand 0J8 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMultisubstituted quinoxalines and pyrido[2,3-d]pyrimidines: Synthesis and SAR study as tyrosine kinase c-Met inhibitors., Wu K, Ai J, Liu Q, Chen T, Zhao A, Peng X, Wang Y, Ji Y, Yao Q, Xu Y, Geng M, Zhang A, Bioorg Med Chem Lett. 2012 Oct 15;22(20):6368-72. doi:, 10.1016/j.bmcl.2012.08.075. Epub 2012 Aug 27. PMID:22985853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4gg7.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4GG7
  • CSU: Contacts of Structural Units for 4GG7
  • Structure Factors (146 Kb)
  • Retrieve 4GG7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GG7 from S2C, [Save to disk]
  • Re-refined 4gg7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GG7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GG7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GG7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gg7] [4gg7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GG7: [TyrKc ] by SMART
    • Other resources with information on 4GG7
  • Community annotation for 4GG7 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science