4GHI Crystal structure of the high affinity heterodimer of HIF2 alpha and ARNT C-terminal PAS domains in complex with a benzoxadiazole antagonist date 2012-08-07
authors Scheuermann, T.H., Key, J., Tambar, U.K., Bruick, R.K., Gardner, K.H.
compound source
symmetry
R_factor
R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand 0X3 enzyme
Primary referenceAllosteric inhibition of hypoxia inducible factor-2 with small molecules., Scheuermann TH, Li Q, Ma HW, Key J, Zhang L, Chen R, Garcia JA, Naidoo J, Longgood J, Frantz DE, Tambar UK, Gardner KH, Bruick RK, Nat Chem Biol. 2013 Apr;9(4):271-6. doi: 10.1038/nchembio.1185. Epub 2013 Feb 24. PMID:23434853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (4ghi.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 4GHI
  • CSU: Contacts of Structural Units for 4GHI
  • Structure Factors (603 Kb)
  • Retrieve 4GHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GHI from S2C, [Save to disk]
  • Re-refined 4ghi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GHI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GHI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ghi_A] [4ghi] [4ghi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GHI: [PAC] [PAS ] by SMART
    • Other resources with information on 4GHI
  • Community annotation for 4GHI at PDBWiki (http://pdbwiki.org)

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