4GHL Structural Basis for Marburg virus VP35 mediate immune evasion mechanisms date 2012-08-07
authors Ramanan, P., Borek, D.M., Otwinowski, Z., Leung, D.W., Amarasinghe, G.K.
compound source
symmetry
R_factor
R_Free 0.23994
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.02
ligand CL, EDO, MG enzyme
Primary referenceStructural basis for Marburg virus VP35-mediated immune evasion mechanisms., Ramanan P, Edwards MR, Shabman RS, Leung DW, Endlich-Frazier AC, Borek DM, Otwinowski Z, Liu G, Huh J, Basler CF, Amarasinghe GK, Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20661-6. doi:, 10.1073/pnas.1213559109. Epub 2012 Nov 26. PMID:23185024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (4ghl.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 4GHL
  • CSU: Contacts of Structural Units for 4GHL
  • Structure Factors (783 Kb)
  • Retrieve 4GHL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GHL from S2C, [Save to disk]
  • Re-refined 4ghl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GHL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GHL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GHL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ghl_C] [4ghl_A] [4ghl] [4ghl_E] [4ghl_B] [4ghl_F] [4ghl_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GHL
  • Community annotation for 4GHL at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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