4GIQ Crystal Structure of mouse RANK bound to RANKL date
authors Nelson, C.A., Wang, M.W.H., Fremont, D.H.
compound source
symmetry
R_factor
R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand CL, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRANKL Employs Distinct Binding Modes to Engage RANK and the Osteoprotegerin Decoy Receptor., Nelson CA, Warren JT, Wang MW, Teitelbaum SL, Fremont DH, Structure. 2012 Oct 2. pii: S0969-2126(12)00334-6. doi:, 10.1016/j.str.2012.08.030. PMID:23039992
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4giq.pdb1.gz) 155 Kb
  • LPC: Ligand-Protein Contacts for 4GIQ
  • CSU: Contacts of Structural Units for 4GIQ
  • Structure Factors (375 Kb)
  • Retrieve 4GIQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GIQ from S2C, [Save to disk]
  • Re-refined 4giq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GIQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GIQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GIQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4giq] [4giq_A] [4giq_R]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GIQ: [TNF] [TNFR ] by SMART
  • Other resources with information on 4GIQ
  • Community annotation for 4GIQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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