4GJE Crystal structure of the refolded amino-terminal domain of human cardiac troponin C in complex with cadmium date
authors Zhang, X., Paetzel, M.
compound source
symmetry
R_factor
R_Free 0.1497
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand ACT, CA, CD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of cardiac troponin C regulatory domain with bound Cd(2+) reveals a closed conformation and unique ion coordination., Zhang XL, Tibbits GF, Paetzel M, Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):722-34. doi:, 10.1107/S0907444913001182. Epub 2013 Apr 11. PMID:23633581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (4gje.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (4gje.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4GJE
  • CSU: Contacts of Structural Units for 4GJE
  • Structure Factors (432 Kb)
  • Retrieve 4GJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GJE from S2C, [Save to disk]
  • Re-refined 4gje structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GJE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GJE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gje_A] [4gje]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GJE: [EFh ] by SMART
  • Other resources with information on 4GJE
  • Community annotation for 4GJE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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