4GJX Crystal structure of CD23 lectin domain mutant D258A date 2012-08-10
authors Yuan, D., Sutton, B.J., Dhaliwal, B.
compound source
symmetry
R_factor
R_Free 0.2512
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand GOL enzyme
Primary referenceCa2+-dependent Structural Changes in the B-cell Receptor CD23 Increase Its Affinity for Human Immunoglobulin E., Yuan D, Keeble AH, Hibbert RG, Fabiane S, Gould HJ, McDonnell JM, Beavil AJ, Sutton BJ, Dhaliwal B, J Biol Chem. 2013 Jul 26;288(30):21667-77. doi: 10.1074/jbc.M113.480657. Epub, 2013 Jun 17. PMID:23775083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (363 Kb) [Save to disk]
  • Biological Unit Coordinates (4gjx.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (4gjx.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (4gjx.pdb3.gz) 48 Kb
  • Biological Unit Coordinates (4gjx.pdb4.gz) 47 Kb
  • Biological Unit Coordinates (4gjx.pdb5.gz) 48 Kb
  • Biological Unit Coordinates (4gjx.pdb6.gz) 47 Kb
  • Biological Unit Coordinates (4gjx.pdb7.gz) 48 Kb
  • Biological Unit Coordinates (4gjx.pdb8.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4GJX
  • CSU: Contacts of Structural Units for 4GJX
  • Structure Factors (1928 Kb)
  • Retrieve 4GJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GJX from S2C, [Save to disk]
  • Re-refined 4gjx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GJX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GJX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gjx_E] [4gjx_C] [4gjx_G] [4gjx_B] [4gjx_F] [4gjx_D] [4gjx] [4gjx_H] [4gjx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GJX: [CLECT ] by SMART
    • Other resources with information on 4GJX
  • Community annotation for 4GJX at PDBWiki (http://pdbwiki.org)

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