4GK3 Human EphA3 Kinase domain in complex with ligand 87 date
authors Dong, J., Caflisch, A.
compound source
symmetry
R_factor
R_Free 0.2128
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand L87 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOptimization of Inhibitors of the Tyrosine Kinase EphB4. 2. Cellular Potency Improvement and Binding Mode Validation by X-ray Crystallography., Lafleur K, Dong J, Huang D, Caflisch A, Nevado C, J Med Chem. 2013 Jan 10;56(1):84-96. doi: 10.1021/jm301187e. Epub 2012 Dec 19. PMID:23253074
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4gk3.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4GK3
  • CSU: Contacts of Structural Units for 4GK3
  • Structure Factors (491 Kb)
  • Retrieve 4GK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GK3 from S2C, [Save to disk]
  • Re-refined 4gk3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GK3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GK3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gk3_A] [4gk3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GK3: [TyrKc ] by SMART
  • Other resources with information on 4GK3
  • Community annotation for 4GK3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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