4GKS A2-MHC Complex carrying FLTGIGIITV date 2012-08-13
authors Sewell, A.K., Rizkallah, P.J., Cole, D.K., Wooldridge, L., Price, D.A.
compound source
symmetry
R_factor
R_Free 0.2852
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand EDO, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

    • Primary referenceT-Cell Receptor optimized peptide skewing of the T-cell repertoire can enhance antigen targeting., Ekeruche-Makinde J, Clement M, Cole DK, Edwards ES, Ladell K, Miles JJ, Matthews KK, Fuller A, Lloyd KA, Madura F, Dolton GM, Pentier J, Lissina A, Gostick E, Baxter TK, Baker BM, Rizkallah PJ, Price DA, Wooldridge L, Sewell AK, J Biol Chem. 2012 Sep 5. PMID:22952231
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (4gks.pdb1.gz) 119 Kb
  • Biological Unit Coordinates (4gks.pdb2.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 4GKS
  • CSU: Contacts of Structural Units for 4GKS
  • Structure Factors (1848 Kb)
  • Retrieve 4GKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GKS from S2C, [Save to disk]
  • Re-refined 4gks structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GKS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GKS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gks_E] [4gks_C] [4gks] [4gks_F] [4gks_D] [4gks_A] [4gks_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GKS: [IGc1 ] by SMART
    • Other resources with information on 4GKS
  • Community annotation for 4GKS at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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