4GNB human SMP30/GNL date 2012-08-17
authors Aizawa, S., Senda, M., Harada, A., Maruyama, N., Ishida, T., Aigaki, T., Ishigami, A., Senda, T.
compound source
symmetry
R_factor
R_Free 0.2181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of the gamma-lactone-ring formation in ascorbic acid biosynthesis by the senescence marker protein-30/gluconolactonase., Aizawa S, Senda M, Harada A, Maruyama N, Ishida T, Aigaki T, Ishigami A, Senda T, PLoS One. 2013;8(1):e53706. doi: 10.1371/journal.pone.0053706. Epub 2013 Jan 22. PMID:23349732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (4gnb.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4gnb.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4GNB
  • CSU: Contacts of Structural Units for 4GNB
  • Structure Factors (621 Kb)
  • Retrieve 4GNB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GNB from S2C, [Save to disk]
  • Re-refined 4gnb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GNB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GNB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GNB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gnb_A] [4gnb_B] [4gnb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4GNB
  • Community annotation for 4GNB at PDBWiki (http://pdbwiki.org)

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