4GP6 Polynucleotide kinase date 2012-08-20
authors Wang, L.K., Das, U., Smith, P., Shuman, S.
compound source
symmetry
R_factor
R_Free 0.2282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand ADP, MG enzyme
Gene CTHE
Primary referenceStructure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system., Wang LK, Das U, Smith P, Shuman S, RNA. 2012 Nov 1. PMID:23118415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (4gp6.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 4GP6
  • CSU: Contacts of Structural Units for 4GP6
  • Structure Factors (176 Kb)
  • Retrieve 4GP6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GP6 from S2C, [Save to disk]
  • Re-refined 4gp6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GP6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GP6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GP6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gp6_B] [4gp6_A] [4gp6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4GP6
  • Community annotation for 4GP6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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