4GRZ Crystal structure of SHP1 catalytic domain with PO4 date
authors Alicea-Velazquez, N.L., Jakoncic, J., Boggon, T.J.
compound source
symmetry
R_factor
R_Free 0.1889
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.37
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-guided studies of the SHP-1/JAK1 interaction provide new insights into phosphatase catalytic domain substrate recognition., Alicea-Velazquez NL, Jakoncic J, Boggon TJ, J Struct Biol. 2013 Jan 4. pii: S1047-8477(12)00343-7. doi:, 10.1016/j.jsb.2012.12.009. PMID:23296072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4grz.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4GRZ
  • CSU: Contacts of Structural Units for 4GRZ
  • Structure Factors (666 Kb)
  • Retrieve 4GRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GRZ from S2C, [Save to disk]
  • Re-refined 4grz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GRZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GRZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4grz_A] [4grz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4GRZ: [PTPc ] by SMART
  • Other resources with information on 4GRZ
  • Community annotation for 4GRZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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