4GWF Crystal structure of the tyrosine phosphatase SHP-2 with Y279C mutation date
authors Qiu, W., Lin, A., Hutchinson, A., Romanov, V., Ruzanov, M., Thompson, C., Lam, K., Kisselman, G., Battaile, K., Chirgadze, N.Y.
compound source
symmetry
R_factor
R_Free 0.2433
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand EDO, GOL, PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (4gwf.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (4gwf.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4GWF
  • CSU: Contacts of Structural Units for 4GWF
  • Structure Factors (1075 Kb)
  • Retrieve 4GWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GWF from S2C, [Save to disk]
  • Re-refined 4gwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GWF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GWF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gwf_B] [4gwf_A] [4gwf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GWF: [PTPc] [SH2 ] by SMART
    • Other resources with information on 4GWF
  • Community annotation for 4GWF at PDBWiki (http://pdbwiki.org)

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