4GXL The crystal structure of Galectin-8 C-CRD in complex with NDP52 date
authors Li, S., Wandel, M.P., Li, F., Liu, Z., He, C., Wu, J., Shi, Y., Randow, F.
compound source
symmetry
R_factor
R_Free 0.2161
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.02
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSterical hindrance promotes selectivity of the autophagy cargo receptor NDP52 for the danger receptor galectin-8 in antibacterial autophagy., Li S, Wandel MP, Li F, Liu Z, He C, Wu J, Shi Y, Randow F, Sci Signal. 2013 Feb 5;6(261):ra9. doi: 10.1126/scisignal.2003730. PMID:23386746
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (4gxl.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 4GXL
  • CSU: Contacts of Structural Units for 4GXL
  • Structure Factors (108 Kb)
  • Retrieve 4GXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GXL from S2C, [Save to disk]
  • Re-refined 4gxl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4GXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4GXL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GXL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gxl] [4gxl_A] [4gxl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GXL: [GLECT] [Gal-bind_lectin ] by SMART
  • Other resources with information on 4GXL
  • Community annotation for 4GXL at PDBWiki (http://pdbwiki.org)

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