4GZY Crystal structures of bacterial RNA Polymerase paused elongation complexes date
authors Weixlbaumer, A., Leon, K., Landick, R., Darst, S.A.
compound source
symmetry
R_factor
R_Free 0.3217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.51
ligand MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


Primary referenceStructural basis of transcriptional pausing in bacteria., Weixlbaumer A, Leon K, Landick R, Darst SA, Cell. 2013 Jan 31;152(3):431-41. doi: 10.1016/j.cell.2012.12.020. PMID:23374340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1056 Kb) [Save to disk]
  • Biological Unit Coordinates (4gzy.pdb1.gz) 1045 Kb
  • LPC: Ligand-Protein Contacts for 4GZY
  • CSU: Contacts of Structural Units for 4GZY
  • Structure Factors (445 Kb)
  • Retrieve 4GZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4GZY from S2C, [Save to disk]
  • Re-refined 4gzy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4GZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4GZY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4GZY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4gzy_B] [4gzy_C] [4gzy_D] [4gzy] [4gzy_E] [4gzy_N] [4gzy_R] [4gzy_A] [4gzy_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4GZY: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART
    • Other resources with information on 4GZY
  • Community annotation for 4GZY at PDBWiki (http://pdbwiki.org)

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