4H13 Crystal Structure of the Cytochrome b6f Complex from Mastigocladus laminosus with TDS date
authors Hasan, S.S., Yamashita, E., Baniulis, D., Cramer, W.A.
compound source
symmetry
R_factor
R_Free 0.2380
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.07
ligand 7PH, 8K6, BCR, CD, CLA, FES, HEM, MYS, OCT, OPC, SQD, TDS, UMQ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C
  • electron transfer activity


  • D
  • electron transporter, transf...


  • E
  • electron transfer activity
  • electron transporter, transf...


  • F
  • electron transfer activity


  • G
  • electron transporter, transf...


  • H
  • electron transfer activity
  • electron transporter, transf...


  • Primary referenceQuinone-dependent proton transfer pathways in the photosynthetic cytochrome b6f complex., Hasan SS, Yamashita E, Baniulis D, Cramer WA, Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):4297-302. doi:, 10.1073/pnas.1222248110. Epub 2013 Feb 25. PMID:23440205
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk]
  • Biological Unit Coordinates (4h13.pdb1.gz) 639 Kb
  • LPC: Ligand-Protein Contacts for 4H13
  • CSU: Contacts of Structural Units for 4H13
  • Structure Factors (783 Kb)
  • Retrieve 4H13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H13 from S2C, [Save to disk]
  • Re-refined 4h13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H13
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H13, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h13_B] [4h13_D] [4h13_F] [4h13] [4h13_H] [4h13_C] [4h13_A] [4h13_G] [4h13_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4H13
  • Community annotation for 4H13 at PDBWiki (http://pdbwiki.org)

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