4H1E Structure of BACE-1 Bound to (7aR)-6-benzoyl-7a-(4-(3-cyanophenyl)thiophen-2-yl)-3-methyl-4-oxohexahydro-1H-pyrrolo[3,4-d]pyrimidin-2(3H)-iminium date 2012-09-10
authors Orth, P.
compound source
symmetry
R_factor
R_Free 0.2968
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 10J BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign and Validation of Bicyclic Iminopyrimidinones As Beta Amyloid Cleaving Enzyme-1 (BACE1) Inhibitors: Conformational Constraint to Favor a Bioactive Conformation., Mandal M, Zhu Z, Cumming JN, Liu X, Strickland C, Mazzola RD, Caldwell JP, Leach P, Grzelak M, Hyde L, Zhang Q, Terracina G, Zhang L, Chen X, Kuvelkar R, Kennedy ME, Favreau L, Cox K, Orth P, Buevich A, Voigt J, Wang H, Kazakevich I, McKittrick BA, Greenlee W, Parker EM, Stamford AW, J Med Chem. 2012 Oct 1. PMID:22989333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (4h1e.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (4h1e.pdb2.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4H1E
  • CSU: Contacts of Structural Units for 4H1E
  • Structure Factors (2461 Kb)
  • Retrieve 4H1E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H1E from S2C, [Save to disk]
  • Re-refined 4h1e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H1E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H1E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H1E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h1e_B] [4h1e] [4h1e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4H1E
  • Community annotation for 4H1E at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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