4H1M	Crystal structure of PYK2 with the indole 10c	date	2012-09-10
authors	Han, S.
compound		source
symmetry		R_factor R_Free 0.2960
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.99
ligand	0YJ BindingDB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Identification of novel series of pyrazole and indole-urea based DFG-out PYK2 inhibitors., Bhattacharya SK, Aspnes GE, Bagley SW, Boehm M, Brosius AD, Buckbinder L, Chang JS, Dibrino J, Eng H, Frederick KS, Griffith DA, Griffor MC, Guimaraes CR, Guzman-Perez A, Han S, Kalgutkar AS, Klug-McLeod J, Garcia-Irizarry C, Li J, Lippa B, Price DA, Southers JA, Walker DP, Wei L, Xiao J, Zawistoski MP, Zhao X, Bioorg Med Chem Lett. 2012 Dec 15;22(24):7523-9. doi: 10.1016/j.bmcl.2012.10.039., Epub 2012 Oct 16. PMID:23153798

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (4h1m.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 4H1M CSU: Contacts of Structural Units for 4H1M Structure Factors (139 Kb) Retrieve 4H1M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4H1M from S2C, [Save to disk] Re-refined 4h1m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4H1M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4H1M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4H1M, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4h1m] [4h1m_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4H1M: [TyrKc ] by SMART

Other resources with information on 4H1M

Community annotation for 4H1M at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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