4H3H Crystal structure of a ternary complex of human symplekin NTD, human Ssu72 and a RNA poymerase II CTD peptide phosphorylated at SER-7 date
authors Xiang, K., Tong, L.
compound source
symmetry
R_factor
R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand PO4, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, B


Primary referenceAn unexpected binding mode for a Pol II CTD peptide phosphorylated at Ser7 in the active site of the CTD phosphatase Ssu72., Xiang K, Manley JL, Tong L, Genes Dev. 2012 Oct 15;26(20):2265-70. doi: 10.1101/gad.198853.112. PMID:23070812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (4h3h.pdb1.gz) 169 Kb
  • Biological Unit Coordinates (4h3h.pdb2.gz) 170 Kb
  • Biological Unit Coordinates (4h3h.pdb3.gz) 169 Kb
  • Biological Unit Coordinates (4h3h.pdb4.gz) 170 Kb
  • LPC: Ligand-Protein Contacts for 4H3H
  • CSU: Contacts of Structural Units for 4H3H
  • Structure Factors (959 Kb)
  • Retrieve 4H3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H3H from S2C, [Save to disk]
  • Re-refined 4h3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H3H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H3H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h3h_B] [4h3h_E] [4h3h_A] [4h3h] [4h3h_F] [4h3h_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4H3H
  • Community annotation for 4H3H at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science