4H56 Crystal structure of the Clostridium perfringens NetB toxin in the membrane inserted form date 2012-09-18
authors Savva, C.G., Costa, S.P.Fernandes.da., Bokori-Brown, M., Naylor, C., Cole, A.R., Moss, D.S., Titball, R.W., Basak, A.K.
compound source
symmetry
R_factor
R_Free 0.3089
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.90
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceMolecular architecture and functional analysis of NetB, a pore-forming toxin from Clostridium perfringens., Savva CG, Fernandes da Costa SP, Bokori-Brown M, Naylor CE, Cole AR, Moss DS, Titball RW, Basak AK, J Biol Chem. 2012 Dec 13. PMID:23239883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (520 Kb) [Save to disk]
  • Biological Unit Coordinates (4h56.pdb1.gz) 256 Kb
  • Biological Unit Coordinates (4h56.pdb2.gz) 261 Kb
  • CSU: Contacts of Structural Units for 4H56
  • Structure Factors (3126 Kb)
  • Retrieve 4H56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H56 from S2C, [Save to disk]
  • Re-refined 4h56 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H56
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H56, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h56] [4h56_C] [4h56_L] [4h56_I] [4h56_D] [4h56_M] [4h56_K] [4h56_H] [4h56_E] [4h56_G] [4h56_B] [4h56_A] [4h56_F] [4h56_J] [4h56_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4H56
  • Community annotation for 4H56 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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