4H57 Thermolysin inhibition date
authors Englert, L., Biela, A., Heine, A., Klebe, G.
compound source
symmetry
R_factor
R_Free 0.1671
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.56
ligand 0PJ, CA, DMS, GOL, ZN enzyme
note 4H57 supersedes 3FWD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDissecting the hydrophobic effect on the molecular level: the role of water, enthalpy, and entropy in ligand binding to thermolysin., Biela A, Nasief NN, Betz M, Heine A, Hangauer D, Klebe G, Angew Chem Int Ed Engl. 2013 Feb 4;52(6):1822-8. doi: 10.1002/anie.201208561., Epub 2013 Jan 2. PMID:23283700
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (4h57.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4H57
  • CSU: Contacts of Structural Units for 4H57
  • Structure Factors (404 Kb)
  • Retrieve 4H57 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H57 from S2C, [Save to disk]
  • Re-refined 4h57 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H57 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H57
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H57, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h57] [4h57_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4H57
  • Community annotation for 4H57 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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