4H58 BRAF in complex with compound 3 date
authors Vasbinder, M., Aquila, B., Augustin, M., Chueng, T., Cook, D., Drew, L., Fauber, B., Glossop, S., Godin, R., Grondine, M., Hennessy, E., Johannes, J., Lee, S., Lyne, P., Moertl, M., Omer, C., Palakurthi, S., Pontz, T., Read, J., Sha, L., Shen, M., Steinbacher, S., Wang, H., Wu, A., Ye, M., Bagal, B.
compound source
symmetry
R_factor
R_Free 0.27158
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand 10Z, CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDiscovery and Optimization of a Novel Series of Potent Mutant B-Raf V600E Selective Kinase Inhibitors., Vasbinder MM, Aquila B, Augustin M, Chen H, Cheung T, Cook D, Drew L, Fauber BP, Glossop S, Grondine M, Hennessy EJ, Johannes J, Lee S, Lyne PD, Mortl M, Omer C, Palakurthi S, Pontz T, Read J, Sha L, Shen M, Steinbacher S, Wang H, Wu A, Ye M, J Med Chem. 2013 Feb 11. PMID:23398453
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (4h58.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (4h58.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (4h58.pdb3.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4H58
  • CSU: Contacts of Structural Units for 4H58
  • Structure Factors (245 Kb)
  • Retrieve 4H58 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H58 from S2C, [Save to disk]
  • Re-refined 4h58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4H58 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4H58
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H58, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h58_A] [4h58] [4h58_B] [4h58_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4H58: [STYKc ] by SMART
  • Other resources with information on 4H58
  • Community annotation for 4H58 at PDBWiki (http://pdbwiki.org)

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