4H5D Crystal structure of human FPPS in ternary complex with YS0470 and inorganic pyrophosphate date
authors Park, J., Lin, Y.S., Tsantrizos, Y.S., Berghuis, A.M.
compound source
symmetry
R_factor
R_Free 0.20302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.02
ligand MG, POP, YS4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceTernary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme's active site closure., Park J, Lin YS, De Schutter JW, Tsantrizos YS, Berghuis AM, BMC Struct Biol. 2012 Dec 12;12(1):32. PMID:23234314
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (4h5d.pdb1.gz) 228 Kb
  • LPC: Ligand-Protein Contacts for 4H5D
  • CSU: Contacts of Structural Units for 4H5D
  • Structure Factors (388 Kb)
  • Retrieve 4H5D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4H5D from S2C, [Save to disk]
  • Re-refined 4h5d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4H5D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4H5D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4H5D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4h5d] [4h5d_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4H5D
  • Community annotation for 4H5D at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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