4HAI Crystal structure of human soluble epoxide hydrolase complexed with N-cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide. date 2012-09-26
authors Pecic, S., Pakhomova, S., Newcomer, M.E., Morisseau, C., Hammock, B.D., Zhu, Z., Deng, S.
compound source
symmetry
R_factor
R_Free 0.23570
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand I23, MG, PO4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis and structure-activity relationship of piperidine-derived non-urea soluble epoxide hydrolase inhibitors., Pecic S, Pakhomova S, Newcomer ME, Morisseau C, Hammock BD, Zhu Z, Rinderspacher A, Deng SX, Bioorg Med Chem Lett. 2013 Jan 15;23(2):417-21. doi: 10.1016/j.bmcl.2012.11.084. , Epub 2012 Dec 1. PMID:23237835
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (4hai.pdb1.gz) 351 Kb
  • LPC: Ligand-Protein Contacts for 4HAI
  • CSU: Contacts of Structural Units for 4HAI
  • Structure Factors (777 Kb)
  • Retrieve 4HAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HAI from S2C, [Save to disk]
  • Re-refined 4hai structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4HAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4HAI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HAI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hai_A] [4hai]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4HAI
  • Community annotation for 4HAI at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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