4HHR Crystal Structure of fatty acid alpha-dioxygenase (Arabidopsis thaliana) date 2012-10-10
authors Goulah, C.C., Zhu, G., Koszelak-Rosenblum, M., Malkowski, M.G.
compound source
symmetry
R_factor
R_Free 0.18227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.51
ligand BNG, CA, CL, HEM, IMD, P6G, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Crystal Structure of alpha-Dioxygenase Provides Insight into Diversity in the Cyclooxygenase-Peroxidase Superfamily., Goulah CC, Zhu G, Koszelak-Rosenblum M, Malkowski MG, Biochemistry. 2013 Feb 14. PMID:23373518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (4hhr.pdb1.gz) 227 Kb
  • LPC: Ligand-Protein Contacts for 4HHR
  • CSU: Contacts of Structural Units for 4HHR
  • Structure Factors (1562 Kb)
  • Retrieve 4HHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4HHR from S2C, [Save to disk]
  • Re-refined 4hhr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4HHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4HHR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4HHR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4hhr] [4hhr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4HHR
  • Community annotation for 4HHR at PDBWiki (http://pdbwiki.org)

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